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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56629815_56630453_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56629815 - 56630453
Intron Length:
639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGCTG
5'SS Class:
major
3'SS Sequence:
TTTCTCTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
CTGTCATTTACT
Flanking Amino Acid:
RGIGGLLFVVAAFQIIGLVI
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
64.7
46.6
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
86.2
0.81
0.6
85
22.5
Minor 5ss
34.8
-1.7
3.4
48.4
47.2
Minor BPS
58.5
0.35
2
77.25
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030007
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032323
56622501 - 56631470
8970