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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56704162_56704896_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56704162 - 56704896
Intron Length:
735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CATGTGTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTTTTCATGT
Flanking Amino Acid:
TEEQLVRQPERTGQRRDLQR
Intron Amino Acid Position:
778

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
100
1.24
0.5
100
0
Major PPT
71
0.47
1
61.8
44.2
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
46.6
-0.1
2
68.03
43.2

Associated Gene:

Gene:
TNFAIP3
Ensembl Gene ID:
ENSAPLG00000002302
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002387
56703822 - 56714711
10890