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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56705130_56706449_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56705130 - 56706449
Intron Length:
1320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
CTGTCCTTACTT
Flanking Amino Acid:
LCFFEYRENHDSSLLRHQRR
Intron Amino Acid Position:
700

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.1
36.5
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
80.3
0.68
0.9
73.2
36
Minor 5ss
32.2
-2
3.1
37
41.8
Minor BPS
67.4
0.63
1.7
79.19
43.7

Associated Gene:

Gene:
TNFAIP3
Ensembl Gene ID:
ENSAPLG00000002302
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002387
56703822 - 56714711
10890