About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56709780_56709988_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56709780 - 56709988
Intron Length:
209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAA
U12 Branch Point Sequence:
TTGTGCTTAACA
Flanking Amino Acid:
ILRRPIIVLADKVVRSLESG
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
67.1
0.42
1.1
57.7
41.3
Major PPT
80.4
0.68
0.9
76.1
32.4
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
74.8
0.77
1.7
83.14
38

Associated Gene:

Gene:
TNFAIP3
Ensembl Gene ID:
ENSAPLG00000002302
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002387
56703822 - 56714711
10890