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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56710137_56710356_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56710137 - 56710356
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGCGG
5'SS Class:
major
3'SS Sequence:
TTTCTTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
GTGTCTTTAAAC
Flanking Amino Acid:
VETGLRYDTRNWEEEWEYLI
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
55.2
49
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
88.9
0.88
0.6
88.5
21
Minor 5ss
29.7
-2.3
3.2
30.3
42.8
Minor BPS
69.5
0.59
1.4
72.34
38.6

Associated Gene:

Gene:
TNFAIP3
Ensembl Gene ID:
ENSAPLG00000002302
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002387
56703822 - 56714711
10890