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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56721_57398_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
56721 - 57398
Intron Length:
678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATCATCA
5'SS Class:
weak_major
3'SS Sequence:
TTTGCTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTAAT
U12 Branch Point Sequence:
TTGGTGGTAATG
Flanking Amino Acid:
HFAAKGGFFEILRIISAYNG
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.2
64
36.8
Major BPS
69.2
0.48
1.3
69.7
44.2
Major PPT
84.3
0.77
0.8
77.4
36.9
Minor 5ss
49.9
-0
2.5
66.2
44.7
Minor BPS
40.4
-0.8
2.5
49.52
45.5

Associated Gene:

Gene:
ANKEF1
Ensembl Gene ID:
ENSAPLG00000008532
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008873
54173 - 66973
12801