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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56726870_56727999_F

Intron Information:

Intron Rank:
135996
Intron Class:
major
Intron Phase:
Intron Coordinates:
56726870 - 56727999
Intron Length:
1130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TATCTCCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCACAT
U12 Branch Point Sequence:
TGTGACAGAGCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
81.4
26.2
Major BPS
53.7
0.09
1.1
60.7
37.6
Major PPT
79.2
0.66
0.8
73.5
31
Minor 5ss
32
-2.1
2.7
37.8
40.1
Minor BPS
41.1
-0.6
2
55.55
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023249
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024662
56726419 - 56735519
9101