Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56728092_56731458_F

Intron Information:

Intron Rank:

135997

Intron Class:

major

Intron Phase:

Intron Coordinates:

56728092 - 56731458

Intron Length:

3367

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAGGA

5'SS Class:

major

3'SS Sequence:

CTTGCAATCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TTCTAATGACAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.71

66.1

40.1

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

69.6

0.44

0.9

37.7

Minor 5ss

28.4

-2.5

3.5

38.3

46.7

Minor BPS

42.5

-0.4

2.1

64.57

44.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023249

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024662

56726419 - 56735519

9101