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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56734094_56735472_F

Intron Information:

Intron Rank:
135993
Intron Class:
major
Intron Phase:
Intron Coordinates:
56734094 - 56735472
Intron Length:
1379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTGTTTCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
41.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
84.8
0.78
0.8
80.2
32
Minor 5ss
30.7
-2.2
3.2
37.8
47.1
Minor BPS
47.7
-0.1
2
66.33
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023249
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024662
56726419 - 56735519
9101
ENSAPLT00000020188
56726419 - 56735519
9101