About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56862267_56886537_R

Intron Information:

Intron Rank:
130814
Intron Class:
major
Intron Phase:
Intron Coordinates:
56862267 - 56886537
Intron Length:
24271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAATT
5'SS Class:
major
3'SS Sequence:
GTATTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
TGGTCAGGACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
79.6
33.3
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
86.7
0.82
0.8
84.8
35.6
Minor 5ss
44.9
-0.6
3
66.2
44.9
Minor BPS
40.8
-0.6
2.4
62.76
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017618
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021279
56861543 - 56894796
33254