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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56951655_56952063_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56951655 - 56952063
Intron Length:
409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTCTTTTGAAAT
Flanking Amino Acid:
PYFVVEMKPYIPGTYMTVST
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
79.7
29
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
88.4
0.86
0.7
83.2
32
Minor 5ss
42.9
-0.8
2.7
55.2
42.1
Minor BPS
60.9
0.42
1.5
77.37
39.2

Associated Gene:

Gene:
IFNGR1
Ensembl Gene ID:
ENSAPLG00000002012
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002058
56943490 - 56961787
18298