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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56953421_56954158_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56953421 - 56954158
Intron Length:
738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TATTACATATAT
Flanking Amino Acid:
QVTFWDNETQHKNEVFADDC
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
84
28
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
53.1
0.1
2.3
69.7
41.2
Minor BPS
47.7
-0
2.1
73.12
42.7

Associated Gene:

Gene:
IFNGR1
Ensembl Gene ID:
ENSAPLG00000002012
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002058
56943490 - 56961787
18298