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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56974390_56975078_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56974390 - 56975078
Intron Length:
689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTGCG
5'SS Class:
major
3'SS Sequence:
CCTGTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATCAT
U12 Branch Point Sequence:
GAGTCCACATCA
Flanking Amino Acid:
KAAVYFVQYKVYGQSTWQNK
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
62.7
42.1
Major BPS
66.8
0.42
1.1
68
37.7
Major PPT
71.9
0.49
0.8
64.7
31
Minor 5ss
35
-1.7
3.2
42.5
44.2
Minor BPS
44.6
-0.4
2
55.08
43

Associated Gene:

Gene:
IL22RA2
Ensembl Gene ID:
ENSAPLG00000001211
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001249
56973291 - 56977210
3920