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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56975258_56976380_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56975258 - 56976380
Intron Length:
1123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTACTCCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TAACCCATAATC
Flanking Amino Acid:
LSCRFTPWRETMIGPPTVNV
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
76
0.59
0.8
74.5
30.6
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
59.6
0.28
1.6
67.58
37.2

Associated Gene:

Gene:
IL22RA2
Ensembl Gene ID:
ENSAPLG00000001211
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001249
56973291 - 56977210
3920