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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57005936_57018629_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57005936 - 57018629
Intron Length:
12694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGTGGC
5'SS Class:
major
3'SS Sequence:
TTTTCTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CCTTTCTTATTT
Flanking Amino Acid:
LLPPRTAAHTGELYCSLPNP
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
64.7
41
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
92.3
0.95
0.6
92.1
18.5
Minor 5ss
31.2
-2.1
3.4
34.3
42
Minor BPS
62.5
0.47
1.6
74.56
43.3

Associated Gene:

Gene:
IL20RA
Ensembl Gene ID:
ENSAPLG00000001174
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001192
57005830 - 57025944
20115