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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57021171_57022408_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57021171 - 57022408
Intron Length:
1238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TAATATCTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTATTTAATA
Flanking Amino Acid:
SVLNKKTKKRWFFSISNNTL
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
81.8
38.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
72
0.5
0.9
63.2
43.3
Minor 5ss
44.9
-0.5
2.9
58.5
45.8
Minor BPS
71.7
0.68
1.4
78.61
31.3

Associated Gene:

Gene:
IL20RA
Ensembl Gene ID:
ENSAPLG00000001174
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001192
57005830 - 57025944
20115