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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57022554_57023054_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57022554 - 57023054
Intron Length:
501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
GTTTTGTTAACA
Flanking Amino Acid:
SKEYCIATLKDKTADEIITV
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.8
31.8
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
77.9
0.63
1
73.3
40.9
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
66.5
0.51
2
79.59
36.6

Associated Gene:

Gene:
IL20RA
Ensembl Gene ID:
ENSAPLG00000001174
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001192
57005830 - 57025944
20115