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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57023195_57024644_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57023195 - 57024644
Intron Length:
1450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTCTTCATTT
Flanking Amino Acid:
VSKQKHPTNLVWHYTDKCKE
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.6
0.8
0.8
77.3
35.9
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
62.8
0.48
1.8
83.89
37.6

Associated Gene:

Gene:
IL20RA
Ensembl Gene ID:
ENSAPLG00000001174
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001192
57005830 - 57025944
20115