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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57063321_57072125_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57063321 - 57072125
Intron Length:
8805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTACTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
TTTTGTTTACTT
Flanking Amino Acid:
LDLSLHNCGQVVDCAWDELV
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.9
35.3
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
79.5
0.66
0.8
73.9
36.4
Minor 5ss
32.2
-2
3.5
47.6
47.9
Minor BPS
60.1
0.39
2
82.98
39.3

Associated Gene:

Gene:
PEX7
Ensembl Gene ID:
ENSAPLG00000016238
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016949
57063252 - 57099834
36583