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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57084632_57093072_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57084632 - 57093072
Intron Length:
8441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
GATTCATCAATG
Flanking Amino Acid:
HIPGCFASASGDHTLRVWDV
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.8
38.5
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
85.3
0.79
0.8
83.6
31.4
Minor 5ss
43
-0.8
2.9
56.9
47.4
Minor BPS
51.4
-0.1
1.9
59.42
41.9

Associated Gene:

Gene:
PEX7
Ensembl Gene ID:
ENSAPLG00000016238
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016949
57063252 - 57099834
36583