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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57093182_57093491_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57093182 - 57093491
Intron Length:
310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCGCTTTATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTACTTCAACA
Flanking Amino Acid:
SGSWDQTAKLWDPAVGKSLR
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78.5
31.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.2
0.55
0.9
73.6
36
Minor 5ss
50.1
0.01
2.4
63.4
43.4
Minor BPS
64
0.44
1.6
73.47
38

Associated Gene:

Gene:
PEX7
Ensembl Gene ID:
ENSAPLG00000016238
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016949
57063252 - 57099834
36583