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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57093570_57097571_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57093570 - 57097571
Intron Length:
4002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATCAG
5'SS Class:
strong_major
3'SS Sequence:
ATATTGTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTTCTAAACT
Flanking Amino Acid:
LQVYKEHTQEAYSVDWSQTR
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
71.2
40.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
75.6
0.58
0.9
70.2
40.5
Minor 5ss
32.9
-1.9
3
40.4
45.7
Minor BPS
78.9
0.99
1.5
95.32
31.5

Associated Gene:

Gene:
PEX7
Ensembl Gene ID:
ENSAPLG00000016238
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016949
57063252 - 57099834
36583