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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57097723_57099197_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57097723 - 57099197
Intron Length:
1475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACGCAG
5'SS Class:
major
3'SS Sequence:
TGTTCTCACTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTCTCACTT
Flanking Amino Acid:
QKGAGIVLLRSYDWNDGLFD
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
60.5
45.8
Major BPS
100
1.24
0.5
100
0
Major PPT
71.7
0.49
0.9
70.7
35.1
Minor 5ss
35.6
-1.6
3.3
46.7
48.6
Minor BPS
55.2
0.24
1.8
75.27
42.3

Associated Gene:

Gene:
PEX7
Ensembl Gene ID:
ENSAPLG00000016238
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016949
57063252 - 57099834
36583