About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57146554_57146810_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57146554 - 57146810
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
CTGTCCCAAATT
Flanking Amino Acid:
QLLKVAQASSSQYFRESILN
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
82.6
0.73
0.8
73.9
36.7
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
51.2
0.12
2
72.05
45.3

Associated Gene:

Gene:
MAP3K5
Ensembl Gene ID:
ENSAPLG00000015796
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016547
57135714 - 57204748
69035