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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57151471_57156234_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57151471 - 57156234
Intron Length:
4764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TTATTTAGAAAG
Flanking Amino Acid:
DLECRDKGTFWFKKAFESEP
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
82.3
30
Major BPS
70
0.5
1
67
39.8
Major PPT
87
0.83
0.7
81.2
36.5
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
46
-0.4
1.8
55.15
39.6

Associated Gene:

Gene:
MAP3K5
Ensembl Gene ID:
ENSAPLG00000015796
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016547
57135714 - 57204748
69035