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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57160913_57163035_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57160913 - 57163035
Intron Length:
2123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TGAATGATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTG
Flanking Amino Acid:
EKLFKLKAPAWYLKSIVETI
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
68.4
39
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
62.4
0.28
1.1
54.2
44.5
Minor 5ss
36.2
-1.6
3.3
43.9
45.7
Minor BPS
57.5
0.1
1.8
67.9
40.3

Associated Gene:

Gene:
MAP3K5
Ensembl Gene ID:
ENSAPLG00000015796
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016547
57135714 - 57204748
69035