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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57165862_57171278_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
57165862 - 57171278
Intron Length:
5417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCATGA
5'SS Class:
weak_major
3'SS Sequence:
TCTTCTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTAACT
Flanking Amino Acid:
SIWHVLPDDKKGIHEWNFSA
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.2
61.3
40.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85
0.79
0.8
79.4
32.6
Minor 5ss
48.9
-0.1
2.6
65.5
45.6
Minor BPS
78.3
0.97
1.3
91.5
30.9

Associated Gene:

Gene:
MAP3K5
Ensembl Gene ID:
ENSAPLG00000015796
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016547
57135714 - 57204748
69035