Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57171329_57176331_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57171329 - 57176331

Intron Length:

5003

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

GCTGTTCTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

CTTCTAATAACA

Flanking Amino Acid:

NFSAASIRGVSISKFEERCC

Intron Amino Acid Position:

458

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.13

0.6

93.1

14.6

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

80.5

0.69

0.9

76.9

37.3

Minor 5ss

41.9

-0.9

2.9

57.8

46.8

Minor BPS

49.6

-0

1.9

66.78

39.2

Associated Gene:

Gene:

MAP3K5

Ensembl Gene ID:

ENSAPLG00000015796

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016547

57135714 - 57204748

69035