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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57176428_57177727_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57176428 - 57177727
Intron Length:
1300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTTTTTTAATT
Flanking Amino Acid:
IYFCTELHCRRFFDMVNSIT
Intron Amino Acid Position:
490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
75.7
35.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.1
0.68
0.9
76.9
36
Minor 5ss
36.5
-1.5
2.9
49
47.2
Minor BPS
80.4
1.03
0.9
89.47
28.1

Associated Gene:

Gene:
MAP3K5
Ensembl Gene ID:
ENSAPLG00000015796
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016547
57135714 - 57204748
69035