About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57186337_57186817_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57186337 - 57186817
Intron Length:
481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGATAT
5'SS Class:
major
3'SS Sequence:
TGCTTTGTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAGAA
U12 Branch Point Sequence:
CAGTAGAGAACT
Flanking Amino Acid:
LGEPQAAMFKVGMFKIHPEI
Intron Amino Acid Position:
739

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1.2
77.7
33.3
Major BPS
46.7
-0.2
0.9
39.1
29
Major PPT
78
0.63
0.9
76.1
37.8
Minor 5ss
35
-1.7
3.1
47.6
47.9
Minor BPS
39
-0.7
2.3
56.09
45.4

Associated Gene:

Gene:
MAP3K5
Ensembl Gene ID:
ENSAPLG00000015796
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016547
57135714 - 57204748
69035