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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57201915_57202734_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57201915 - 57202734
Intron Length:
820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
ATGCTTGTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CTTTTCTCAAAA
Flanking Amino Acid:
KNLRLRSQPIDIPGLSVCHR
Intron Amino Acid Position:
1137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
32.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
70.6
0.46
1
62.2
43.8
Minor 5ss
32
-2.1
3.1
39.6
46.4
Minor BPS
61.8
0.37
1.7
72.5
39.4

Associated Gene:

Gene:
MAP3K5
Ensembl Gene ID:
ENSAPLG00000015796
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016547
57135714 - 57204748
69035