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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57202848_57203796_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57202848 - 57203796
Intron Length:
949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTCATTTAAACT
Flanking Amino Acid:
QGADEATINKFLAEDYTLMD
Intron Amino Acid Position:
1175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
71.5
40.2
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
84.6
0.78
0.7
80.6
31.4
Minor 5ss
27.4
-2.6
2.7
31.3
42.4
Minor BPS
58
0.33
1.7
75.45
41.9

Associated Gene:

Gene:
MAP3K5
Ensembl Gene ID:
ENSAPLG00000015796
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016547
57135714 - 57204748
69035