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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57267471_57280574_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57267471 - 57280574
Intron Length:
13104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTCGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTCTGATTT
Flanking Amino Acid:
ERREEREKQLAARESIWLER
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.1
39.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.7
0.71
0.7
78
30
Minor 5ss
33.4
-1.9
3.4
48.4
47.3
Minor BPS
58.9
0.36
1.7
77.68
38.9

Associated Gene:

Gene:
MAP7
Ensembl Gene ID:
ENSAPLG00000012664
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013228
57262160 - 57315076
52917