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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57280739_57281573_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57280739 - 57281573
Intron Length:
835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAGG
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTACTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATTAT
U12 Branch Point Sequence:
AATGTATTATCC
Flanking Amino Acid:
KRRQRLEEDKERHEAVVRRT
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.8
42.1
Major BPS
67
0.42
1.3
60.1
46.3
Major PPT
65
0.34
1.1
61.7
43.7
Minor 5ss
32.2
-2
3
40.4
45.3
Minor BPS
47.2
-0.2
1.9
58.7
40

Associated Gene:

Gene:
MAP7
Ensembl Gene ID:
ENSAPLG00000012664
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013228
57262160 - 57315076
52917