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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57305122_57307515_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57305122 - 57307515
Intron Length:
2394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGTAC
5'SS Class:
major
3'SS Sequence:
TTTCTCTCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TATTAAAAAAAA
Flanking Amino Acid:
ISKANITGEAVITSPVSLLD
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
64.6
35.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
84.7
0.78
0.7
78
30.8
Minor 5ss
43.2
-0.7
3.1
58.4
46.5
Minor BPS
40.7
-0.7
2.2
57.65
40.6

Associated Gene:

Gene:
MAP7
Ensembl Gene ID:
ENSAPLG00000012664
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013228
57262160 - 57315076
52917