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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57307655_57314149_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57307655 - 57314149
Intron Length:
6495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
AGTATATGAAGA
Flanking Amino Acid:
TSHQPPINMDSNLNPEKNTN
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
66.7
0.41
1
57.8
39
Major PPT
83.5
0.75
0.7
81.7
30.3
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
43.4
-0.5
1.9
53.4
38.1

Associated Gene:

Gene:
MAP7
Ensembl Gene ID:
ENSAPLG00000012664
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031731
57280575 - 57315541
34967
ENSAPLT00000013228
57262160 - 57315076
52917