Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57314377_57315065_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57314377 - 57315065

Intron Length:

689

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTTTG

5'SS Class:

strong_major

3'SS Sequence:

CCTTCTGTTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

GTTTGCTGACCT

Flanking Amino Acid:

VDSVQTHQTAEVI*

Intron Amino Acid Position:

692

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.9

78.8

38.3

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

77.3

0.61

0.8

72.4

32.2

Minor 5ss

42.4

-0.8

3.1

57.3

47.4

Minor BPS

51.7

0.13

2.2

77.65

44.4

Associated Gene:

Gene:

MAP7

Ensembl Gene ID:

ENSAPLG00000012664

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031731

57280575 - 57315541

34967

ENSAPLT00000013228

57262160 - 57315076

52917