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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57320502_57321731_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57320502 - 57321731
Intron Length:
1230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAACTGTC
5'SS Class:
major
3'SS Sequence:
CCCATTTACGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAC
U12 Branch Point Sequence:
TCCTGCTGACCT
Flanking Amino Acid:
ASIIQHMIDHEKMMHLLKCH
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.2
70.9
39.9
Major BPS
66.4
0.41
1
59
37.6
Major PPT
69.3
0.43
0.9
64.4
35.4
Minor 5ss
43.3
-0.7
3.2
61.8
43
Minor BPS
47.7
-0
2.2
68.08
48.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012545
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013056
57319453 - 57342625
23173