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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57322484_57324935_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57322484 - 57324935
Intron Length:
2452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTACC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
AAGTGCTGAACA
Flanking Amino Acid:
KNLSLSKNRERIIESPCVEG
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
74.9
35.3
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
84.9
0.78
0.8
79.9
32.1
Minor 5ss
30.2
-2.3
2.9
36.9
40.4
Minor BPS
53.4
0.1
1.9
64.09
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012545
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013056
57319453 - 57342625
23173