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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57328380_57329381_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57328380 - 57329381
Intron Length:
1002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCAAACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
TCTTCCCAAACC
Flanking Amino Acid:
CVCLRNLATSADTQAEMVSQ
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
63.9
0.31
1
56.6
37.7
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
59.6
0.28
2
75.12
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012545
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013056
57319453 - 57342625
23173