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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57338329_57339279_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57338329 - 57339279
Intron Length:
951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTAT
5'SS Class:
major
3'SS Sequence:
CTCGTTCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
GACTTCTGAGTG
Flanking Amino Acid:
ALYYLHMSQHMNIPLPAEHL
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
78.1
32.4
Major BPS
76.8
0.67
1
66
40.9
Major PPT
79
0.65
0.8
73
31.9
Minor 5ss
44.1
-0.6
2.9
63.8
41.6
Minor BPS
45.7
-0.4
1.7
45.76
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012545
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013056
57319453 - 57342625
23173