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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57339400_57342399_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57339400 - 57342399
Intron Length:
3000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTATATCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATATCTGTATAT
Flanking Amino Acid:
AQEFLQHIERGFETSPLGKD
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.7
36.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
74.1
0.54
0.9
71.2
39.8
Minor 5ss
29.3
-2.4
3.5
39
46.3
Minor BPS
46.2
-0.2
2.2
68.3
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012545
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013056
57319453 - 57342625
23173