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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57361605_57364126_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57361605 - 57364126
Intron Length:
2522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTAACCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TCTATTGTAACC
Flanking Amino Acid:
HIVSLVHHVKEQYFKSAGMT
Intron Amino Acid Position:
617

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
66.3
0.37
1
60.1
40.4
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
51
0.01
2
65.81
40.5

Associated Gene:

Gene:
BCLAF1
Ensembl Gene ID:
ENSAPLG00000007570
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036660
57354035 - 57364648
10614
ENSAPLT00000033030
57354035 - 57374747
20713
ENSAPLT00000007869
57357328 - 57373187
15860
ENSAPLT00000045788
57354035 - 57366273
12239