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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57364233_57364495_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57364233 - 57364495
Intron Length:
263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATATGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCACATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATATATTTACTT
Flanking Amino Acid:
CTRQKSPEIHSAQILRGICL
Intron Amino Acid Position:
652

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
80.3
32.3
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
76.3
0.59
0.9
70.7
34
Minor 5ss
44.1
-0.6
3.3
66.4
45.1
Minor BPS
53.7
0.19
1.7
71.92
39.3

Associated Gene:

Gene:
BCLAF1
Ensembl Gene ID:
ENSAPLG00000007570
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036660
57354035 - 57364648
10614