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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57366099_57366230_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57366099 - 57366230
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTAAATTTAAAC
Flanking Amino Acid:
YKDYKSYKDDSKYVLSVFYT
Intron Amino Acid Position:
739

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
86.4
0.82
0.8
80.4
36.6
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
55.7
0.16
1.6
66.66
38.1

Associated Gene:

Gene:
BCLAF1
Ensembl Gene ID:
ENSAPLG00000007570
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045788
57354035 - 57366273
12239