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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57371169_57372827_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57371169 - 57372827
Intron Length:
1659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGGGTGTA
5'SS Class:
major
3'SS Sequence:
GATATTATTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
GTGTTCTAACCT
Flanking Amino Acid:
YTPKSKKYFLHDDRDDGVDY
Intron Amino Acid Position:
849

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
70.2
35.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
69.9
0.45
1
63.4
42.4
Minor 5ss
29.6
-2.3
3.4
36.2
43.3
Minor BPS
51.5
0.13
2
71.67
45.4

Associated Gene:

Gene:
BCLAF1
Ensembl Gene ID:
ENSAPLG00000007570
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033030
57354035 - 57374747
20713