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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57376206_57376550_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57376206 - 57376550
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGGTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTAAC
U12 Branch Point Sequence:
CCGGGGCTAACG
Flanking Amino Acid:
LRRLLAHLGQIAAVWHKKEY
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
51.7
0.04
1.3
55.3
40.3
Major PPT
70.2
0.46
0.9
60.8
40.2
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
34.2
-1.3
2.5
34.63
46.3

Associated Gene:

Gene:
MTFR2
Ensembl Gene ID:
ENSAPLG00000007596
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007875
57375918 - 57383459
7542