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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57377036_57378604_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57377036 - 57378604
Intron Length:
1569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACCTTTTAAACT
Flanking Amino Acid:
HDEGQVFARFRTELCRKEKS
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.8
22.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.7
0.78
0.8
77.7
36.7
Minor 5ss
36
-1.6
2.6
43.5
43.6
Minor BPS
56
0.27
1.7
68.73
43.1

Associated Gene:

Gene:
MTFR2
Ensembl Gene ID:
ENSAPLG00000007596
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007875
57375918 - 57383459
7542