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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57380212_57382227_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57380212 - 57382227
Intron Length:
2016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
AGATAATAAATT
Flanking Amino Acid:
LNKVQLRATERSPGGTPLSK
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1
69.7
43.7
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
88.3
0.86
0.6
84.7
22.9
Minor 5ss
38.2
-1.3
3.1
49.2
47.1
Minor BPS
45.5
-0.2
2
62.58
41

Associated Gene:

Gene:
MTFR2
Ensembl Gene ID:
ENSAPLG00000007596
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007875
57375918 - 57383459
7542