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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57407760_57410755_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57407760 - 57410755
Intron Length:
2996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCCCC
5'SS Class:
major
3'SS Sequence:
TTTTACATTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTCTTTTTACAT
Flanking Amino Acid:
ERVCEEFYRQGDLEQKFELE
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.3
61
42
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
80.2
0.68
0.8
75.1
34.2
Minor 5ss
34.6
-1.8
2.9
43.6
43.6
Minor BPS
57.9
0.33
1.7
75.95
41.3

Associated Gene:

Gene:
PDE7B
Ensembl Gene ID:
ENSAPLG00000007602
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038065
57404526 - 57577231
172706
ENSAPLT00000036599
57404526 - 57577231
172706
ENSAPLT00000007953
57404526 - 57485702
81177